How-To Geek on MSN

I Use Python, but I’m Learning R and the Tidyverse for Data Analysis Too

I 'm a big fan of Python for data analysis, but even I get curious about what else is available. R has long been the go-to ...

AI model predicts peptide sequences that prevent ribosome stalling in E. coli protein production

Proteins sourced from microorganisms are attracting attention for their potential in biomanufacturing a variety of products, ...
BioSpace

Lexogen Launches miRVEL Profiling Small RNA-Seq Kit for Streamlined and Cost-Efficient sRNA Expression Analysis

VIENNA, Oct. 16, 2025 /PRNewswire/ -- Lexogen, a leader in RNA sequencing technologies, announces the launch of the miRVEL Profiling Small RNA-Seq Library Prep Kit, designed to facilitate small RNA ...
University of Delaware

Cell-to-cell shipping

It’s no secret that we need new ways to treat and detect disease, including cancer. Specifically, we need better biomarkers that can be used for diagnosis and better ways to selectively get medicine ...
GitHub

several useful jupyter notebooks from Terra - ggplot2, bulkRNAseq, ArchR, single cell with cumulus

notebooks_2020_10_08_bulk_RNAseq_pathwayAnalysis.ipynb - a bulk RNAseq analysis tutorial I wrote using kallisto quantified data (R) youtube link for a walkthrough of ...
eLife

Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and Disease

This valuable study analyzes aging-related chromatin changes through the lens of intra-chromosomal gene correlation length, which is a novel computational metric that captures spatial correlations in ...
IEEE

kmmDE: a Non-parametric Method for Differential Expression Analysis of Time-course RNA-seq Data Using Maximum Mean Discrepancy

Abstract: Accurately identifying differentially expressed genes from time-course RNA-Seq data is essential for understanding the dynamics of transcriptome changes during biological processes. Although ...
EurekAlert!

Large language models revolutionize bioinformatics, accelerating breakthroughs in protein analysis, drug discovery, and genomic research

Artificial intelligence-powered large language models (LLMs), like those behind ChatGPT, are rapidly reshaping bioinformatics research. A new study systematically details how these models decode ...
IEEE

LYNX-RNA: A Scalable Nextflow Workflow for RNA-Seq Analysis with Integrated Large Language Models for Comprehensive Result Interpretation

Abstract: RNA sequencing has become an essential technique in the life sciences, providing a comprehensive methodology. RNA sequencing has become an essential method in the life sciences, providing a ...
Frontiers

Integrating single-cell RNA-seq, bulk RNA-seq and network pharmacology reveals protective effect of salidroside in peritoneal dialysis-associated peritoneal fibrosis

Salidroside (2- (4-Hydroxyphenyl) ethyl β-D-glucopyranoside, SAL) is a bioactive compound present in Rhodiola rosea L., exhibiting diverse pharmacological properties such as anti-inflammatory and anti ...
eLife

Integrated Analysis of Single-Cell and Bulk RNA-Seq Data reveals that Ferroptosis-Related Genes Mediated the Tumor Microenvironment predicts Prognosis, and guides Drug ...

This study presents a useful finding for the ferroptosis-mediated tumor microenvironment (TME) in triple-negative breast cancer (TNBC) using public single-cell RNA sequencing (scRNA-seq) and bulk RNA ...
Yahoo! Sports

WWE Saturday Night's Main Event results, grades, analysis: Cody Rhodes returns, John Cena smashes R-Truth

WWE's revival run of the iconic "Saturday Night's Main Event" show continued this weekend at the Yuengling Center in Tampa, Florida. The 39th installment of the event — and third since WWE brought it ...